Transcript: lnc-AFF4-2:2

Basic information

LNCipedia transcript ID: lnc-AFF4-2:2 
LNCipedia gene ID: lnc-AFF4-2
Location (hg38): chr5:132998705-133026545
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 548 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT103799
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 178.2877 coding 
CPAT coding probability 1.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AFF4-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AFF4-2:2
4.0 lnc-AFF4-2:2
4.1 lnc-AFF4-2:2
5.0 lnc-AFF4-2:2
5.1 lnc-TIFAB-50:2
5.2 lnc-AFF4-2:2