Transcript: lnc-AFG1L-1:1

Basic information

LNCipedia transcript ID: lnc-AFG1L-1:1 
LNCipedia gene ID: lnc-AFG1L-1
Ensembl Gene ID: ENSG00000230248
Ensembl Transcript ID: ENST00000419801
Location (hg38): chr6:108275642-108276546
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 632 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011350; ENST00000419801; ENST00000419801.1; RP1-128O3.4-001; OTTHUMT00000041716.2; NONHSAT114340
Alternative gene names: XLOC_005420; linc-LACE1-1; ENSG00000230248; RP1-128O3.4; ENSG00000230248.1; OTTHUMG00000015322.2; Z98742.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.0382 non-coding 
CPAT coding probability 4.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AFG1L-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LACE1-1:1
3.1 lnc-LACE1-1:1
4.0 lnc-LACE1-1:1
4.1 lnc-LACE1-1:1
5.0 lnc-LACE1-1:1
5.1 lnc-SMPD2-29:1
5.2 lnc-AFG1L-1:1