Transcript: lnc-AFG1L-4:3

Basic information

LNCipedia transcript ID: lnc-AFG1L-4:3 
LNCipedia gene ID: lnc-AFG1L-4
Location (hg38): chr6:108230329-108264711
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1957 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003psf_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.8567 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AFG1L-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LACE1-4:3
4.0 lnc-LACE1-4:3
4.1 lnc-LACE1-4:3
5.0 lnc-LACE1-4:3
5.1 lnc-SMPD2-31:3
5.2 lnc-AFG1L-4:3