Transcript: lnc-AFG3L2-1:1

Basic information

LNCipedia transcript ID: lnc-AFG3L2-1:1 
LNCipedia gene ID: lnc-AFG3L2-1
Location (hg38): chr18:12228876-12234484
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2162 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026427; NONHSAT058358
Alternative gene names: XLOC_012774; linc-MPPE1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.9901 non-coding 
CPAT coding probability 10.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AFG3L2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AFG3L2-1:1
3.1 lnc-AFG3L2-1:1
4.0 lnc-AFG3L2-1:1
4.1 lnc-AFG3L2-1:1
5.0 lnc-AFG3L2-1:1
5.1 lnc-SMAD2-266:1
5.2 lnc-AFG3L2-1:1