Transcript: lnc-AFG3L2-2:1

Basic information

LNCipedia transcript ID: lnc-AFG3L2-2:1 
LNCipedia gene ID: lnc-AFG3L2-2
Location (hg38): chr18:12378903-12379264
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 362 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT058367; FPKM1_group_13641_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.9096 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AFG3L2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AFG3L2-2:1
4.0 lnc-AFG3L2-2:1
4.1 lnc-AFG3L2-2:1
5.0 lnc-AFG3L2-2:1
5.1 lnc-SMAD2-261:1
5.2 lnc-AFG3L2-2:1