Transcript: lnc-AGA-24:4

Basic information

LNCipedia transcript ID: lnc-AGA-24:4 
LNCipedia gene ID: lnc-AGA-24
Location (hg38): chr4:177220491-177301192
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 331 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008668; NONHSAT099377
Alternative gene names: XLOC_004182; linc-VEGFC-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -341.5596 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGA-24:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-487E13.1.1-1:1
3.1 lnc-RP11-487E13.1.1-1:1
4.0 lnc-RP11-487E13.1.1-1:1
4.1 lnc-RP11-487E13.1.1-1:1
5.0 lnc-RP11-487E13.1.1-1:1
5.1 lnc-AGA-7:4
5.2 lnc-AGA-24:4