Transcript: lnc-AGA-24:6

Basic information

LNCipedia transcript ID: lnc-AGA-24:6 
LNCipedia gene ID: lnc-AGA-24
Location (hg38): chr4:177220383-177227304
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1012 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008667; NONHSAT099376
Alternative gene names: XLOC_004182; linc-VEGFC-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.6908 non-coding 
CPAT coding probability 3.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGA-24:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-487E13.1.1-1:2
3.1 lnc-RP11-487E13.1.1-1:2
4.0 lnc-RP11-487E13.1.1-1:2
4.1 lnc-RP11-487E13.1.1-1:2
5.0 lnc-RP11-487E13.1.1-1:2
5.1 lnc-AGA-7:6
5.2 lnc-AGA-24:6