Transcript: lnc-AGAP2-2:1

Basic information

LNCipedia transcript ID: lnc-AGAP2-2:1 
LNCipedia gene ID: lnc-AGAP2-2
Ensembl Gene ID: ENSG00000257342
Ensembl Transcript ID: ENST00000549477
Location (hg38): chr12:57694132-57721510
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 699 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549477.1; RP11-571M6.7-001; OTTHUMT00000408772.1; NONHSAT028952
Alternative gene names: ENSG00000257342.1; RP11-571M6.7; OTTHUMG00000170379.1; AC025165.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGAP2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGAP2-2:1
4.0 lnc-AGAP2-2:1
4.1 lnc-AGAP2-2:1
5.0 lnc-AGAP2-2:1
5.1 lnc-PMEL-67:1
5.2 lnc-AGAP2-2:1