Transcript: lnc-AGAP4-1:2

Basic information

LNCipedia transcript ID: lnc-AGAP4-1:2 
LNCipedia gene ID: lnc-AGAP4-1
Location (hg38): chr10:45815428-45817324
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 322 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000426412; ENST00000426412.2; FAM25D-001; OTTHUMT00000048028.1; NONHSAT013325
Alternative gene names: ENSG00000214986; FAM25D; ENSG00000214986.4; OTTHUMG00000018207.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 51.5852 non-coding 
CPAT coding probability 73.74% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AGAP4-1:2 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AGAP8-1:1
3.1 lnc-AGAP8-1:1
4.0 lnc-AGAP8-1:1
4.1 lnc-AGAP8-1:1
5.0 lnc-AGAP8-1:1
5.1 lnc-LRRC18-59:1
5.2 lnc-AGAP4-1:2