Transcript: lnc-AGAP5-1:30

Basic information

LNCipedia transcript ID: lnc-AGAP5-1:30 
LNCipedia gene ID: lnc-AGAP5-1
Location (hg38): chr10:73694807-73730494
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3876 bp
Exons: 12
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000271816.1|ENCT00000057539.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 158.6683 coding 
CPAT coding probability 80.31% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AGAP5-1:30 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AGAP5-1:30
5.0 lnc-AGAP5-1:30
5.1 lnc-VSIR-31:17
5.2 lnc-AGAP5-1:30