Transcript: lnc-AGGF1-1:1

Basic information

LNCipedia transcript ID: lnc-AGGF1-1:1 
LNCipedia gene ID: lnc-AGGF1-1
Ensembl Gene ID: ENSG00000250615
Ensembl Transcript ID: ENST00000512650
Location (hg38): chr5:77073881-77074520
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 385 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009428; ENST00000512650.1; CTC-564N23.2-001; OTTHUMT00000369060.2; NONHSAT102258
Alternative gene names: XLOC_004435; linc-PDE8B-2; ENSG00000250615.1; CTC-564N23.2; OTTHUMG00000162471.2; AC008581.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.5897 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGGF1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AGGF1-1:1
3.1 lnc-AGGF1-1:1
4.0 lnc-AGGF1-1:1
4.1 lnc-AGGF1-1:1
5.0 lnc-AGGF1-1:1
5.1 lnc-BHMT2-28:1
5.2 lnc-AGGF1-1:1