Transcript: lnc-AGO2-1:1

Basic information

LNCipedia transcript ID: lnc-AGO2-1:1 
LNCipedia gene ID: lnc-AGO2-1
Location (hg38): chr8:140520156-140529501
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 9346 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000560295.1; CTA-204B4.6-001; OTTHUMT00000418039.1; NONHSAT129370
Alternative gene names: ENSG00000259758.1; CTA-204B4.6; OTTHUMG00000172354.1; CASC7; LINC00980


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.1667 non-coding 
CPAT coding probability 5.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGO2-1:1 yes no no no

Available literature

  1. Lennox (2016), Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides., Nucleic Acids Res.
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  3. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.
  4. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EIF2C2-1:1
4.0 CASC7:1
4.1 CASC7:1
5.0 CASC7:1
5.1 lnc-SLURP2-36:1
5.2 lnc-AGO2-1:1