Transcript: lnc-AGR3-1:20

Basic information

LNCipedia transcript ID: lnc-AGR3-1:20 
LNCipedia gene ID: lnc-AGR3-1
Ensembl Gene ID: ENSG00000237773
Ensembl Transcript ID: ENST00000643090
Location (hg38): chr7:16970320-17299288
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1733 bp
Exons: 3
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000643090.1
Alternative gene names: ENSG00000237773.6; AC073332.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -49.0112 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGR3-1:20 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-AGR3-1:20
5.1 lnc-AGR3-1:20
5.2 lnc-AGR3-1:20