Transcript: lnc-AGR3-1:21

Basic information

LNCipedia transcript ID: lnc-AGR3-1:21 
LNCipedia gene ID: lnc-AGR3-1
Ensembl Gene ID: ENSG00000237773
Ensembl Transcript ID: ENST00000646331
Location (hg38): chr7:17144253-17298453
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1025 bp
Exons: 5
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000646331.1
Alternative gene names: ENSG00000237773.6; AC073332.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -24.5076 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGR3-1:21 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-AGR3-1:21
5.1 lnc-AGR3-1:21
5.2 lnc-AGR3-1:21