Transcript: lnc-AGRP-1:16

Basic information

LNCipedia transcript ID: lnc-AGRP-1:16 
LNCipedia gene ID: lnc-AGRP-1
Ensembl Gene ID: ENSG00000259804
Ensembl Transcript ID: ENST00000562846
Location (hg38): chr16:67561411-67562309
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 899 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562846.1; CTD-2012K14.7-001; OTTHUMT00000421178.1; NONHSAT143146
Alternative gene names: ENSG00000259804.1; CTD-2012K14.7; OTTHUMG00000172888.1; AC027682.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.4939 non-coding 
CPAT coding probability 8.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGRP-1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGRP-5:1
4.0 lnc-AGRP-5:1
4.1 lnc-AGRP-1:16
5.0 lnc-AGRP-1:16
5.1 lnc-PSMB10-10:10
5.2 lnc-AGRP-1:16