Transcript: lnc-AGRP-1:7

Basic information

LNCipedia transcript ID: lnc-AGRP-1:7 
LNCipedia gene ID: lnc-AGRP-1
Ensembl Gene ID: ENSG00000261386
Ensembl Transcript ID: ENST00000605277
Location (hg38): chr16:67549214-67563958
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 798 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT143142; ENST00000605277.1
Alternative gene names: ENSG00000261386.2; CTD-2012K14.6; AC027682.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.06 non-coding 
CPAT coding probability 3.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGRP-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGRP-4:2
4.0 lnc-AGRP-4:2
4.1 lnc-AGRP-1:7
5.0 lnc-AGRP-1:7
5.1 lnc-PSMB10-10:1
5.2 lnc-AGRP-1:7