Transcript: lnc-AGT-1:1

Basic information

LNCipedia transcript ID: lnc-AGT-1:1 
LNCipedia gene ID: lnc-AGT-1
Location (hg38): chr1:230638468-230640700
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1038 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001864; NONHSAT010128
Alternative gene names: XLOC_001249; linc-PGBD5-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.0529 non-coding 
CPAT coding probability 11.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGT-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AGT-1:1
3.1 lnc-AGT-1:1
4.0 lnc-AGT-1:1
4.1 lnc-AGT-1:1
5.0 lnc-AGT-1:1
5.1 lnc-EXOC8-14:1
5.2 lnc-AGT-1:1