Transcript: lnc-AGTPBP1-3:1

Basic information

LNCipedia transcript ID: lnc-AGTPBP1-3:1 
LNCipedia gene ID: lnc-AGTPBP1-3
Location (hg38): chr9:85038356-85040934
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 778 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016822; NONHSAT132786
Alternative gene names: XLOC_007754; linc-SLC28A3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.4604 non-coding 
CPAT coding probability 2.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGTPBP1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AGTPBP1-3:1
3.1 lnc-AGTPBP1-3:1
4.0 lnc-AGTPBP1-3:1
4.1 lnc-AGTPBP1-3:1
5.0 lnc-AGTPBP1-3:1
5.1 lnc-SEMA4D-83:1
5.2 lnc-AGTPBP1-3:1