Transcript: lnc-AGTR1-3:1

Basic information

LNCipedia transcript ID: lnc-AGTR1-3:1 
LNCipedia gene ID: lnc-AGTR1-3
Ensembl Gene ID: ENSG00000241792
Ensembl Transcript ID: ENST00000476987
Location (hg38): chr3:148093175-148127233
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 492 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005613; ENST00000476987; ENST00000476987.1; RP11-501O2.1-001; OTTHUMT00000355800.1; NONHSAT092598
Alternative gene names: XLOC_002860; linc-AGTR1-3; ENSG00000241792; RP11-501O2.1; ENSG00000241792.1; OTTHUMG00000159498.1; AC092958.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -189.4716 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGTR1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AGTR1-3:1
3.1 lnc-AGTR1-3:1
4.0 lnc-AGTR1-3:1
4.1 lnc-AGTR1-3:1
5.0 lnc-AGTR1-3:1
5.1 lnc-AGTR1-3:1
5.2 lnc-AGTR1-3:1