Transcript: lnc-AHSP-5:2

Basic information

LNCipedia transcript ID: lnc-AHSP-5:2 
LNCipedia gene ID: lnc-AHSP-5
Location (hg38): chr16:31508471-31509248
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 647 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000569782.1; RP11-452L6.7-001; OTTHUMT00000432894.1
Alternative gene names: ENSG00000260625.1; RP11-452L6.7; OTTHUMG00000176621.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -483.2277 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AHSP-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC5A2-1:1
4.0 lnc-SLC5A2-1:1
4.1 lnc-AHSP-5:2
5.0 lnc-AHSP-5:2
5.1 lnc-ZNF646-46:2
5.2 lnc-AHSP-5:2