Transcript: lnc-AIFM2-1:2

Basic information

LNCipedia transcript ID: lnc-AIFM2-1:2 
LNCipedia gene ID: lnc-AIFM2-1
Ensembl Gene ID: ENSG00000224222
Ensembl Transcript ID: ENST00000427247
Location (hg38): chr10:69994626-70007836
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 524 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017994; ENST00000427247; ENST00000427247.1; RP11-262I2.2-001; OTTHUMT00000048479.1; NONHSAT013820
Alternative gene names: XLOC_008844; linc-NEUROG3; ENSG00000224222; RP11-262I2.2; ENSG00000224222.1; OTTHUMG00000018395.1; AC024601.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.5152 non-coding 
CPAT coding probability 7.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AIFM2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AIFM2-1:2
3.1 lnc-AIFM2-1:2
4.0 lnc-AIFM2-1:2
4.1 lnc-AIFM2-1:2
5.0 lnc-AIFM2-1:2
5.1 lnc-C10orf105-22:2
5.2 lnc-AIFM2-1:2