Transcript: lnc-AIPL1-2:3

Basic information

LNCipedia transcript ID: lnc-AIPL1-2:3 
LNCipedia gene ID: lnc-AIPL1-2
Ensembl Gene ID: ENSG00000262231
Ensembl Transcript ID: ENST00000571062
Location (hg38): chr17:6189361-6189863
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 503 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000571062.1; RP11-960B9.2-002; OTTHUMT00000439047.1; NONHSAT145246
Alternative gene names: ENSG00000262231.1; RP11-960B9.2; OTTHUMG00000177818.1; AC104770.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -408.8795 non-coding 
CPAT coding probability 3.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AIPL1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AIPL1-2:3
4.0 lnc-AIPL1-2:3
4.1 lnc-AIPL1-2:3
5.0 lnc-AIPL1-2:3
5.1 lnc-PHF23-25:6
5.2 lnc-AIPL1-2:3