Transcript: lnc-AJAP1-3:4

Basic information

LNCipedia transcript ID: lnc-AJAP1-3:4 
LNCipedia gene ID: lnc-AJAP1-3
Location (hg38): chr1:4998002-5003784
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 482 bp
Exons: 5
Sources: Broad Institute
Alternative transcript names: TCONS_00001929
Alternative gene names: XLOC_000036; linc-KCNAB2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -253.8156 non-coding 
CPAT coding probability 7.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AJAP1-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AJAP1-3:2
3.1 lnc-AJAP1-3:4
4.0 lnc-AJAP1-3:4
4.1 lnc-AJAP1-3:4
5.0 lnc-AJAP1-3:4
5.1 lnc-VAMP3-38:4
5.2 lnc-AJAP1-3:4