Transcript: lnc-AJAP1-9:2

Basic information

LNCipedia transcript ID: lnc-AJAP1-9:2 
LNCipedia gene ID: lnc-AJAP1-9
Location (hg38): chr1:4315413-4323308
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 801 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc001alk_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.4723 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AJAP1-9:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AJAP1-9:2
4.0 lnc-AJAP1-9:2
4.1 lnc-AJAP1-9:2
5.0 lnc-AJAP1-9:2
5.1 lnc-VAMP3-48:2
5.2 lnc-AJAP1-9:2