Transcript: lnc-AKAP13-1:1

Basic information

LNCipedia transcript ID: lnc-AKAP13-1:1 
LNCipedia gene ID: lnc-AKAP13-1
Ensembl Gene ID: ENSG00000259636
Ensembl Transcript ID: ENST00000560696
RefSeq ID: NR_135682
Location (hg38): chr15:86932880-86946331
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 351 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000560696.1; RP11-133L19.2-001; OTTHUMT00000415795.1; NONHSAT048139; NR_135682.1
Alternative gene names: ENSG00000259636.1; RP11-133L19.2; OTTHUMG00000171909.1; AC016987.2; LOC105370954


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -371.0629 non-coding 
CPAT coding probability 2.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AKAP13-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AKAP13-1:1
4.0 lnc-AKAP13-1:1
4.1 lnc-AKAP13-1:1
5.0 lnc-AKAP13-1:1
5.1 lnc-MRPS11-7:1
5.2 lnc-AKAP13-1:1