Transcript: lnc-AKAP14-1:1

Basic information

LNCipedia transcript ID: lnc-AKAP14-1:1 
LNCipedia gene ID: lnc-AKAP14-1
Location (hg38): chrX:119990790-119993810
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2019 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017237; NONHSAT138355
Alternative gene names: XLOC_008058; linc-RHOXF2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.9244 non-coding 
CPAT coding probability 73.54% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AKAP14-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AKAP14-1:1
3.1 lnc-AKAP14-1:1
4.0 lnc-AKAP14-1:1
4.1 lnc-AKAP14-1:1
5.0 lnc-AKAP14-1:1
5.1 lnc-TEX13C-67:2
5.2 lnc-AKAP14-1:1