Transcript: lnc-AKR1C2-5:1

Basic information

LNCipedia transcript ID: lnc-AKR1C2-5:1 
LNCipedia gene ID: lnc-AKR1C2-5
Ensembl Gene ID: ENSG00000230096
Ensembl Transcript ID: ENST00000420082
Location (hg38): chr10:4415305-4426179
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 691 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017908; ENST00000420082; ENST00000420082.1; RP11-34C15.2-001; OTTHUMT00000046510.1; NONHSAT011097
Alternative gene names: XLOC_008702; linc-KLF6-4; ENSG00000230096; RP11-34C15.2; ENSG00000230096.1; OTTHUMG00000017574.1; AC022535.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.1155 non-coding 
CPAT coding probability 4.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AKR1C2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AKR1C2-4:1
3.1 lnc-AKR1C2-5:1
4.0 lnc-AKR1C2-5:1
4.1 lnc-AKR1C2-5:1
5.0 lnc-AKR1C2-5:1
5.1 lnc-KLF6-33:1
5.2 lnc-AKR1C2-5:1