Transcript: lnc-ALAS1-1:1

Basic information

LNCipedia transcript ID: lnc-ALAS1-1:1 
LNCipedia gene ID: lnc-ALAS1-1
Location (hg38): chr3:52214304-52216136
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1094 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003dde_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.3184 non-coding 
CPAT coding probability 9.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALAS1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALAS1-1:1
4.0 lnc-ALAS1-1:1
4.1 lnc-ALAS1-1:1
5.0 lnc-ALAS1-1:1
5.1 lnc-SPCS1-20:1
5.2 lnc-ALAS1-1:1