Transcript: lnc-ALAS2-2:1

Basic information

LNCipedia transcript ID: lnc-ALAS2-2:1 
LNCipedia gene ID: lnc-ALAS2-2
Location (hg38): chrX:55000516-55007173
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6342 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000113726.1|MICT00000375262.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -78.9786 non-coding 
CPAT coding probability 15.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALAS2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ALAS2-2:1
5.0 lnc-ALAS2-2:1
5.1 lnc-ITIH6-3:1
5.2 lnc-ALAS2-2:1