Transcript: lnc-ALCAM-11:1

Basic information

LNCipedia transcript ID: lnc-ALCAM-11:1 
LNCipedia gene ID: lnc-ALCAM-11
Location (hg38): chr3:104400097-104650796
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 853 bp
Exons: 8
Sources: Nielsen et al.,2014
Alternative transcript names: l_2424_chr3:104118940-104353971_lung
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.641 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALCAM-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALCAM-11:1
4.0 lnc-ALCAM-11:1
4.1 lnc-ALCAM-11:1
5.0 lnc-ALCAM-11:1
5.1 lnc-TMEM45A-42:1
5.2 lnc-ALCAM-11:1