Transcript: lnc-ALCAM-16:2

Basic information

LNCipedia transcript ID: lnc-ALCAM-16:2 
LNCipedia gene ID: lnc-ALCAM-16
Location (hg38): chr3:104265740-104267985
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 815 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_21625_transcript_5
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.3036 non-coding 
CPAT coding probability 5.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALCAM-16:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALCAM-16:2
4.0 lnc-ALCAM-16:2
4.1 lnc-ALCAM-16:2
5.0 lnc-ALCAM-16:2
5.1 lnc-TMEM45A-38:2
5.2 lnc-ALCAM-16:2