Transcript: lnc-ALCAM-3:1

Basic information

LNCipedia transcript ID: lnc-ALCAM-3:1 
LNCipedia gene ID: lnc-ALCAM-3
Location (hg38): chr3:103927195-104011724
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 294 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005423; NONHSAT090945
Alternative gene names: XLOC_002744; linc-ALCAM-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.8631 non-coding 
CPAT coding probability 1.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALCAM-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALCAM-3:1
3.1 lnc-ALCAM-3:1
4.0 lnc-ALCAM-3:1
4.1 lnc-ALCAM-3:1
5.0 lnc-ALCAM-3:1
5.1 lnc-TMEM45A-32:2
5.2 lnc-ALCAM-3:1