Transcript: lnc-ALCAM-8:12

Basic information

LNCipedia transcript ID: lnc-ALCAM-8:12 
LNCipedia gene ID: lnc-ALCAM-8
Location (hg38): chr3:106176951-106195536
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1796 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000061185.1|FTMT21100020117.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -85.5953 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALCAM-8:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ALCAM-8:12
5.0 lnc-ALCAM-8:12
5.1 lnc-TMEM45A-52:11
5.2 lnc-ALCAM-8:12