Transcript: lnc-ALDH1A3-1:10

Basic information

LNCipedia transcript ID: lnc-ALDH1A3-1:10 
LNCipedia gene ID: lnc-ALDH1A3-1
Location (hg38): chr15:100861506-100867370
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 850 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00024030
Alternative gene names: XLOC_011388; linc-ALDH1A3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -289.6705 non-coding 
CPAT coding probability 53.53% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ALDH1A3-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALDH1A3-1:4
3.1 lnc-ALDH1A3-1:10
4.0 lnc-ALDH1A3-1:10
4.1 lnc-ALDH1A3-1:10
5.0 lnc-ALDH1A3-1:10
5.1 lnc-OR4F15-14:14
5.2 lnc-ALDH1A3-1:10