Transcript: lnc-ALDH1A3-1:18

Basic information

LNCipedia transcript ID: lnc-ALDH1A3-1:18 
LNCipedia gene ID: lnc-ALDH1A3-1
Ensembl Gene ID: ENSG00000272808
Ensembl Transcript ID: ENST00000431060
Location (hg38): chr15:100849831-100865457
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5068 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431060.4
Alternative gene names: ENSG00000272808.3; RP11-66B24.7; AC015712.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -15.3106 non-coding 
CPAT coding probability 47.76% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ALDH1A3-1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ALDH1A3-1:18
4.1 lnc-ALDH1A3-1:18
5.0 lnc-ALDH1A3-1:18
5.1 lnc-OR4F15-14:9
5.2 lnc-ALDH1A3-1:18