Transcript: lnc-ALDH1A3-1:5

Basic information

LNCipedia transcript ID: lnc-ALDH1A3-1:5 
LNCipedia gene ID: lnc-ALDH1A3-1
Location (hg38): chr15:100849831-100864296
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3907 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000431060.3; RP11-66B24.2-002; OTTHUMT00000416697.1; NONHSAT051130
Alternative gene names: ENSG00000232386.3; RP11-66B24.2; OTTHUMG00000172065.1; ENSG00000272808.1; RP11-66B24.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.3106 non-coding 
CPAT coding probability 49.35% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ALDH1A3-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALDH1A3-1:5
4.0 lnc-ALDH1A3-1:5
4.1 lnc-ALDH1A3-1:5
5.0 lnc-ALDH1A3-1:5
5.1 lnc-OR4F15-14:8
5.2 lnc-ALDH1A3-1:5