Transcript: lnc-ALDH1A3-2:1

Basic information

LNCipedia transcript ID: lnc-ALDH1A3-2:1 
LNCipedia gene ID: lnc-ALDH1A3-2
Ensembl Gene ID: ENSG00000259579
Ensembl Transcript ID: ENST00000559755
Location (hg38): chr15:100716249-100828497
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 643 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559755.1; RP11-66B24.5-001; OTTHUMT00000418215.1; NONHSAT051119
Alternative gene names: ENSG00000259579.1; RP11-66B24.5; OTTHUMG00000172376.1; AC087762.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.4229 non-coding 
CPAT coding probability 6.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALDH1A3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALDH1A3-2:1
4.0 lnc-ALDH1A3-2:1
4.1 lnc-ALDH1A3-2:1
5.0 lnc-ALDH1A3-2:1
5.1 lnc-OR4F15-16:7
5.2 lnc-ALDH1A3-2:1