Transcript: lnc-ALDH3A2-5:1

Basic information

LNCipedia transcript ID: lnc-ALDH3A2-5:1 
LNCipedia gene ID: lnc-ALDH3A2-5
Ensembl Gene ID: ENSG00000262681
Ensembl Transcript ID: ENST00000577087
Location (hg38): chr17:19719059-19722428
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3370 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577087.2; RP11-311F12.1-001; OTTHUMT00000441032.2; NONHSAT146522
Alternative gene names: ENSG00000262681.2; RP11-311F12.1; OTTHUMG00000178220.2; AC005722.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8798 non-coding 
CPAT coding probability 86.46% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ALDH3A2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALDH3A2-1:1
4.0 lnc-ALDH3A2-1:1
4.1 lnc-ALDH3A2-1:1
5.0 lnc-ALDH3A2-1:1
5.1 lnc-PIPOX-126:1
5.2 lnc-ALDH3A2-5:1