Transcript: lnc-ALDH3B1-2:5

Basic information

LNCipedia transcript ID: lnc-ALDH3B1-2:5 
LNCipedia gene ID: lnc-ALDH3B1-2
Ensembl Gene ID: ENSG00000251637
Ensembl Transcript ID: ENST00000511677
Location (hg38): chr11:67886496-67891345
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3387 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511677; TCONS_00019099; ENST00000511677.1; RP11-119D9.1-001; OTTHUMT00000393800.1; NONHSAT022478
Alternative gene names: ENSG00000251637; XLOC_009181; linc-ALDH3B1-1; RP11-119D9.1; ENSG00000251637.2; OTTHUMG00000167223.1; ENSG00000251637.6; AP003716.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 42.7283 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ALDH3B1-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDUFS8-1:3
3.1 lnc-NDUFS8-2:3
4.0 lnc-NDUFS8-2:3
4.1 lnc-NDUFS8-2:3
5.0 lnc-NDUFS8-2:3
5.1 lnc-NDUFS8-2:3
5.2 lnc-ALDH3B1-2:5