Transcript: lnc-ALDH3B1-2:7

Basic information

LNCipedia transcript ID: lnc-ALDH3B1-2:7 
LNCipedia gene ID: lnc-ALDH3B1-2
Ensembl Gene ID: ENSG00000251637
Ensembl Transcript ID: ENST00000533670
Location (hg38): chr11:67886590-67906350
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 613 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533670; ENST00000533670.1; RP11-119D9.1-003; OTTHUMT00000393801.1; NONHSAT022479
Alternative gene names: ENSG00000251637; RP11-119D9.1; ENSG00000251637.2; OTTHUMG00000167223.1; ENSG00000251637.6; AP003716.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 31.7375 non-coding 
CPAT coding probability 14.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALDH3B1-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDUFS8-1:5
3.1 lnc-NDUFS8-2:5
4.0 lnc-NDUFS8-2:5
4.1 lnc-NDUFS8-2:5
5.0 lnc-NDUFS8-2:5
5.1 lnc-NDUFS8-2:5
5.2 lnc-ALDH3B1-2:7