Transcript: lnc-ALG1-5:1

Basic information

LNCipedia transcript ID: lnc-ALG1-5:1 
LNCipedia gene ID: lnc-ALG1-5
Ensembl Gene ID: ENSG00000260835
Ensembl Transcript ID: ENST00000564076
Location (hg38): chr16:6573767-6577359
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 572 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564076.1; RP11-468I15.1-001; OTTHUMT00000433075.1; NONHSAT140359
Alternative gene names: ENSG00000260835.1; RP11-468I15.1; OTTHUMG00000176671.1; AC007223.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.4067 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALG1-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-124K4.2.1-3:1
4.0 lnc-RP11-124K4.2.1-3:1
4.1 lnc-RP11-124K4.2.1-3:1
5.0 lnc-RP11-124K4.2.1-3:1
5.1 lnc-SMIM22-27:1
5.2 lnc-ALG1-5:1