Transcript: lnc-ALG10-2:1

Basic information

LNCipedia transcript ID: lnc-ALG10-2:1 
LNCipedia gene ID: lnc-ALG10-2
Ensembl Gene ID: ENSG00000255628
Ensembl Transcript ID: ENST00000538025
Location (hg38): chr12:34149839-34162238
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538025; ENST00000538025.1; RP11-313F23.3-001; OTTHUMT00000403315.1; NONHSAT027652
Alternative gene names: ENSG00000255628; RP11-313F23.3; ENSG00000255628.1; OTTHUMG00000169288.1; AC140847.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.7939 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALG10-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALG10-2:1
3.1 lnc-ALG10-2:1
4.0 lnc-ALG10-2:1
4.1 lnc-ALG10-2:1
5.0 lnc-ALG10-2:1
5.1 lnc-DNM1L-11:1
5.2 lnc-ALG10-2:1