Transcript: lnc-ALG13-3:1

Basic information

LNCipedia transcript ID: lnc-ALG13-3:1 
LNCipedia gene ID: lnc-ALG13-3
Location (hg38): chrX:111763569-111772741
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3000 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT138198; FPKM1_group_35021_transcript_6
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.4661 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALG13-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALG13-3:1
4.0 lnc-ALG13-3:1
4.1 lnc-ALG13-3:1
5.0 lnc-ALG13-3:1
5.1 lnc-TEX13C-177:1
5.2 lnc-ALG13-3:1