Transcript: lnc-ALG14-2:2

Basic information

LNCipedia transcript ID: lnc-ALG14-2:2 
LNCipedia gene ID: lnc-ALG14-2
Ensembl Gene ID: ENSG00000228852
Ensembl Transcript ID: ENST00000598739
Location (hg38): chr1:95248700-95264054
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 262 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT004656; ENST00000598739.1
Alternative gene names: ENSG00000228852.2; RP11-57H12.5; ENSG00000228852.6; AC092802.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -287.198 non-coding 
CPAT coding probability 1.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALG14-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALG14-2:2
4.0 lnc-ALG14-2:2
4.1 lnc-ALG14-2:2
5.0 lnc-ALG14-2:2
5.1 lnc-CNN3-12:3
5.2 lnc-ALG14-2:2