Transcript: lnc-ALG14-5:4

Basic information

LNCipedia transcript ID: lnc-ALG14-5:4 
LNCipedia gene ID: lnc-ALG14-5
Ensembl Gene ID: ENSG00000237954
Ensembl Transcript ID: ENST00000427695
Location (hg38): chr1:95356235-95380972
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 845 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427695; ENST00000427695.3
Alternative gene names: ENSG00000237954; RP11-14O19.2; ENSG00000237954.3; ENSG00000237954.7; AL445218.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.4987 non-coding 
CPAT coding probability 10.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALG14-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALG14-3:3
3.1 lnc-ALG14-5:4
4.0 lnc-ALG14-5:4
4.1 lnc-ALG14-5:4
5.0 lnc-ALG14-5:4
5.1 lnc-CNN3-14:4
5.2 lnc-ALG14-5:4