Transcript: lnc-ALK-2:1

Basic information

LNCipedia transcript ID: lnc-ALK-2:1 
LNCipedia gene ID: lnc-ALK-2
Location (hg38): chr2:30292784-30300491
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1431 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005127; NONHSAT069898
Alternative gene names: XLOC_002040; linc-ALK-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.0953 non-coding 
CPAT coding probability 11.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALK-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALK-1:1
3.1 lnc-ALK-2:1
4.0 lnc-ALK-2:1
4.1 lnc-ALK-2:1
5.0 lnc-ALK-2:1
5.1 lnc-RBKS-62:1
5.2 lnc-ALK-2:1