Transcript: lnc-ALKBH1-1:1

Basic information

LNCipedia transcript ID: lnc-ALKBH1-1:1 
LNCipedia gene ID: lnc-ALKBH1-1
Location (hg38): chr14:77656000-77657578
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 364 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022805; NONHSAT037997
Alternative gene names: XLOC_011082; linc-SPTLC2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.902 non-coding 
CPAT coding probability 4.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALKBH1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALKBH1-1:1
3.1 lnc-ALKBH1-1:1
4.0 lnc-ALKBH1-1:1
4.1 lnc-ALKBH1-1:1
5.0 lnc-ALKBH1-1:1
5.1 lnc-PROX2-51:1
5.2 lnc-ALKBH1-1:1