Transcript: lnc-ALPK2-2:6

Basic information

LNCipedia transcript ID: lnc-ALPK2-2:6 
LNCipedia gene ID: lnc-ALPK2-2
Location (hg38): chr18:58670480-58671873
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 734 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000267226.1|ENST00000588144.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -249.026 non-coding 
CPAT coding probability 45.46% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ALPK2-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ALPK2-2:6
5.0 lnc-ALPK2-2:6
5.1 lnc-MBD2-42:5
5.2 lnc-ALPK2-2:6