Transcript: lnc-ALX1-2:5

Basic information

LNCipedia transcript ID: lnc-ALX1-2:5 
LNCipedia gene ID: lnc-ALX1-2
Ensembl Gene ID: ENSG00000258815
Ensembl Transcript ID: ENST00000555596
Location (hg38): chr12:85318060-85342912
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 519 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555596; ENST00000555596.1; RP11-408B11.2-001; OTTHUMT00000409807.1; NONHSAT029748
Alternative gene names: ENSG00000258815; RP11-408B11.2; ENSG00000258815.1; OTTHUMG00000170606.1; AC131532.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.0765 non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALX1-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALX1-1:1
3.1 lnc-ALX1-1:1
4.0 lnc-ALX1-2:5
4.1 lnc-ALX1-2:5
5.0 lnc-ALX1-2:5
5.1 lnc-ALX1-2:5
5.2 lnc-ALX1-2:5