Transcript: lnc-ALX3-2:1

Basic information

LNCipedia transcript ID: lnc-ALX3-2:1 
LNCipedia gene ID: lnc-ALX3-2
Ensembl Gene ID: ENSG00000235526
Ensembl Transcript ID: ENST00000440688
Location (hg38): chr1:110177643-110178719
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 508 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440688.1; RP5-1028L10.2-001; OTTHUMT00000032555.1; NONHSAT005101
Alternative gene names: ENSG00000235526.1; RP5-1028L10.2; OTTHUMG00000011763.1; AL355990.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -221.4312 non-coding 
CPAT coding probability 2.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALX3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALX3-2:1
4.0 lnc-ALX3-2:1
4.1 lnc-ALX3-2:1
5.0 lnc-ALX3-2:1
5.1 lnc-LAMTOR5-6:1
5.2 lnc-ALX3-2:1